For protecting files created with Adobe Presenter (www.adobe.com) the following steps are necessary.
Step 1 - Select Publish in Adobe Presenter
In Adobe Presenter select Publish. As publish option, select SWF My Computer.

Step 2 - Import files in Multimedia Protector
Now import all the files from the project folder and mark viewer.swf as start file using the button Define as starting file. A red icon signals the start file.

Note: The description refers to Adobe Presenter 7 but other versions, which can create flash files, should also work.
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